PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00466.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 315aa    MW: 35051.7 Da    PI: 7.4939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00466.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.62.8e-54211491128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              +ppGfrFhPtdeel+++yL kkv ++++++  +i++vd++k+ePw+Lp +k+k +ekewyfF+ rd+ky+tg r+nrat++gyWka
  Rsa1.0_00466.1_g00002.1  21 MPPGFRFHPTDEELITYYLLKKVLDSNFSC-AAISQVDLNKSEPWELPaEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKA 105
                              79****************************.88***************7788999******************************* PP

                      NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgkd+e++s+ +++l g+kktLvfykgrapkgek+ Wvmheyrl
  Rsa1.0_00466.1_g00002.1 106 TGKDREIKSSkTKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRL 149
                              ********9856677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5915174IPR003441NAC domain
PROSITE profilePS5100557.0121174IPR003441NAC domain
PfamPF023651.3E-2822149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDMDAFSGWE RSSRYEDETI MPPGFRFHPT DEELITYYLL KKVLDSNFSC AAISQVDLNK  60
SEPWELPAEK AKMGEKEWYF FTLRDRKYPT GLRTNRATEA GYWKATGKDR EIKSSKTKSL  120
LGMKKTLVFY KGRAPKGEKS CWVMHEYRLD GKFSYRYITS STKDEWVLSK VCLKSSVVSR  180
ETKLVSSSSS PVSVAGEVSS GVNVSSSVIA PIIDAFATEH VSCFSNTSAT AHHADASFPT  240
YLPAPPPLLP RQPRRIGGDD DVAFGQFMDL GSSGQFNFDD DAGFFSPNLP SLPPTVLLPP  300
LYGGGSALSF WPFAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-482118017171NO APICAL MERISTEM PROTEIN
1ut4_B5e-482118017171NO APICAL MERISTEM PROTEIN
1ut7_A5e-482118017171NO APICAL MERISTEM PROTEIN
1ut7_B5e-482118017171NO APICAL MERISTEM PROTEIN
3swm_A6e-482118020174NAC domain-containing protein 19
3swm_B6e-482118020174NAC domain-containing protein 19
3swm_C6e-482118020174NAC domain-containing protein 19
3swm_D6e-482118020174NAC domain-containing protein 19
3swp_A6e-482118020174NAC domain-containing protein 19
3swp_B6e-482118020174NAC domain-containing protein 19
3swp_C6e-482118020174NAC domain-containing protein 19
3swp_D6e-482118020174NAC domain-containing protein 19
4dul_A5e-482118017171NAC domain-containing protein 19
4dul_B5e-482118017171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667540.0KC966754.1 Brassica napus NAC transcription factor 54-1 (NAC54-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589248.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
SwissprotQ9FRV41e-151NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A0D3ADI00.0A0A0D3ADI0_BRAOL; Uncharacterized protein
STRINGBra021592.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134811528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.11e-133NAC family protein